8 Data Analysis and Reporting
Recurring surveillance analyses, reproducible reports with Quarto and R Markdown, interactive dashboards with Shiny, and automated chart and table generation. These solutions turn analysis-ready data into actionable outputs.
NoteSolutions Coming Soon
This part of the book will be populated as solutions are developed through the Automation Clinic intake process. Each solution will be published as a subchapter below.
Have a data analysis or reporting problem? Submit it to the clinic or open a GitHub Issue.
8.1 What Belongs Here
Solutions in this part address tasks involving analysis and output generation:
- Recurring surveillance reports automated with parameterized Quarto or R Markdown documents
- Automated chart and table generation for standard epidemiological outputs (incidence tables, trend charts, demographic breakdowns)
- Interactive dashboards built with R Shiny for local or team use (code provided; hosting is not included)
- Parameterized report templates that generate jurisdiction-specific or time-period-specific outputs from a single script
- Automated data visualization pipelines using ggplot2, Plotly, or similar tools
- Spatial analysis and mapping using QGIS or R spatial packages for geographic health data